Do you have a link for the filters? I didn't see the Mavic filters on their page. You will most likely get a warning with the filter and hood attached.
Edit, Sorry, I see the hood is not attached to the camera, that will not create an issue.
You should be ok to calibrate with filter and hood fitted to the mp.when the mavic isn't been used you should install the gimbal lock for protection.The camera and gimbal are very delicate and should be protected as best as possible during transportation and storage.