I think you're on to something there, and agree with what you're saying. Even if you do take care to position the prop blades "correctly" into the troughs in the flymore case to ensure the case itself is not putting any pressure on the blades, I think the blades are still being bent just by forcing them to nest together like this.
I have always stored my Mini in its Flymore case between flights since its purchase in December with no apparent consequences. But on the very first flight since upgrading to v01.005 firmware I received the Motor Speed warning with instructions to replace the left-rear prop blades.
Prior to installing the new blades, the rear props always seemed to slide over/under each other to nest easily in the Flymore case. But I notice the new blades now cannot slide under/over the opposing motor's blades unless one side or the other is bent up/down.
I wish I had taken a "before" photo as well, because previously the blades slid together to nest easily together. But now, with new blades installed on the left-rear, and the original blades still on the right-rear, you can see that they can no longer nest together without deforming one side or other. Putting fresh right-rear blades would make it even more obvious.View attachment 100321
Thanks for the feedback. I think you might be the first person who understood the intent of my original post. It's interesting to note that you didn't notice much pressure when nesting the rear props together until you replaced the left-rear blades. When I noticed the interference/bending, it was also after replacing the props. Your anecdotal evidence seems to suggest that the props take on a new shape after being stored per DJI's instructions, which further supports the idea that the props are highly malleable and can take on a new shape based on how they are stored. Definitely not a good design characteristic for propellers.