Ok seems this thread is not over. I have establshed some issues which i believe contributes to this problem.
If i fly with prop guards and its windy it seems the propellers and wind combined is starting a motion in the prop guards making the craft start to vibrate. This in turn is messing up both the IMU and compass, so that when i remove the prop guards the vibration is still there. After re-calibrating the IMU and compass the craft stops vibrating. I have no clue why it does this but it does. My tip would be....dont be cheap like me. Buy real prop guards......or a bunch of propellers. pretty much the same thing
I hadn't realized that you had non-standard equipment on the aircraft. It's not surprising at all that it caused problems, but it is interesting that the resulting FC adjustments persisted between flights.