I don't think the previous version of VLM will help... You might want to reset VLM to its initial conditions by pressing CTRL while you start it.Results are the same. The gimbel warnings are gone but the altitude warnings are there. The altitude is still way higher than what is set the the program.
I did another run with different altitude (150), different waypoints and different POIs. The results are the same, 4000 feet above ground level. I did another with the "above ground" box unchecked and it did not change the altitude. This is just baffling.
Interestingly I have a number of other missions, several of which that I have run and all of those originally showed the correct altitude on GE when opened. For instance, one had an altitude of 100 feet. It opened on GE at the proper altitude IN THE PAST, and when run in real life performed as it should. It now transfers to GE with the exaggerated altitudes. I am thinking of dropping back to the last version of VLM to see if that is the problem.
I would like to see the complete Activity Log from the VLM run of your mission. And the GE result - remember to clear your "temporary Places" first.
Thanks